IL_8P2K_245

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_245 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.158

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8P2K|1|B5|G|3683
8P2K|1|B5|A|3684
8P2K|1|B5|G|3685
*
8P2K|1|B5|C|3787
8P2K|1|B5|U|3788
8P2K|1|B5|U|3789

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a