IL_8P2K_248

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_248 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.1493

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8P2K|1|B5|G|3702
8P2K|1|B5|G|3703
8P2K|1|B5|A|3704
8P2K|1|B5|G|3705
*
8P2K|1|B5|C|3766
8P2K|1|B5|G|3767
8P2K|1|B5|C|3768
8P2K|1|B5|C|3769
8P2K|1|B5|G|3770
8P2K|1|B5|G|3771
8P2K|1|B5|U|3772
8P2K|1|B5|G|3773
8P2K|1|B5|A|3774
8P2K|1|B5|A|3775
8P2K|1|B5|A|3776
8P2K|1|B5|U|3777
8P2K|1|B5|A|3778
8P2K|1|B5|C|3779

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bv

Ribosomal protein uL1