IL_8P2K_249
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 8P2K|1|B5|G|3812, 8P2K|1|B5|G|3814, 8P2K|1|B5|G|3815, 8P2K|1|B5|C|3908, 8P2K|1|B5|U|3909
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P2K_249 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.2127
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8P2K|1|B5|G|3810
8P2K|1|B5|U|3811
8P2K|1|B5|G|3812
8P2K|1|B5|A|3813
8P2K|1|B5|G|3814
8P2K|1|B5|G|3815
8P2K|1|B5|C|3816
*
8P2K|1|B5|G|3907
8P2K|1|B5|C|3908
8P2K|1|B5|U|3909
8P2K|1|B5|C|3910
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- 60S ribosomal protein L8
- Chain BG
- 60S ribosomal protein L7a
- Chain BX
- Ribosomal_L23eN domain-containing protein
Coloring options: