IL_8P2K_261

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_261 not in the Motif Atlas

Geometric match to IL_7A0S_087

Geometric discrepancy: 0.1655

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8P2K|1|B5|C|4158
8P2K|1|B5|C|4159
8P2K|1|B5|A|4160
8P2K|1|B5|A|4161
8P2K|1|B5|G|4162
*
8P2K|1|B5|C|4172
8P2K|1|B5|G|4173
8P2K|1|B5|A|4174
8P2K|1|B5|C|4175
8P2K|1|B5|G|4176

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain Bm

Ubiquitin-60S ribosomal protein L40