IL_8P2K_313

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCACU*A(OMG)

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_313 not in the Motif Atlas

Homologous match to IL_8C3A_416

Geometric discrepancy: 0.1374

The information below is about IL_8C3A_416

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

8P2K|1|A2|C|492
8P2K|1|A2|C|493
8P2K|1|A2|A|494
8P2K|1|A2|C|495
8P2K|1|A2|U|496
*
8P2K|1|A2|A|509
8P2K|1|A2|OMG|510

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Ai

40S ribosomal protein S9

Chain Ax

40S ribosomal protein S24