IL_8P2K_314

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_314 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.2576

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8P2K|1|A2|G|536
8P2K|1|A2|A|537
8P2K|1|A2|C|538
*
8P2K|1|A2|G|547
8P2K|1|A2|G|548
8P2K|1|A2|C|549
8P2K|1|A2|C|550

Current chains

Chain A2

18s rRNA

Nearby chains

Chain AD

40S ribosomal protein S30