IL_8P2K_341

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUA*(PSU)(PSU)CUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_341 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.2619

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8P2K|1|B5|G|1684
8P2K|1|B5|A|1685
8P2K|1|B5|U|1686
8P2K|1|B5|U|1687
8P2K|1|B5|A|1688
*
8P2K|1|B5|PSU|1720
8P2K|1|B5|PSU|1721
8P2K|1|B5|C|1722
8P2K|1|B5|U|1723
8P2K|1|B5|C|1724

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

Ribosomal protein L5 eukaryotic C-terminal domain-containing protein

Chain BI

60S ribosomal protein L10