IL_8P2K_354

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

8P2K|1|B5|A2M|3517, 8P2K|1|B5|C|3523, 8P2K|1|B5|C|3542

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_354 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1005

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8P2K|1|B5|C|3513
8P2K|1|B5|5MC|3514
8P2K|1|B5|A|3515
8P2K|1|B5|A|3516
8P2K|1|B5|A2M|3517
8P2K|1|B5|U|3518
8P2K|1|B5|G|3519
8P2K|1|B5|C|3520
8P2K|1|B5|C|3521
8P2K|1|B5|U|3522
8P2K|1|B5|C|3523
8P2K|1|B5|OMG|3524
*
8P2K|1|B5|OMC|3540
8P2K|1|B5|G|3541
8P2K|1|B5|C|3542
8P2K|1|B5|G|3543

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60S ribosomal protein L41