IL_8P2K_370

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_370 not in the Motif Atlas

Geometric match to IL_9DFE_057

Geometric discrepancy: 0.3489

The information below is about IL_9DFE_057

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8P2K|1|A2|C|1752
8P2K|1|A2|C|1753
*
8P2K|1|A2|G|1781
8P2K|1|A2|A|1782
8P2K|1|A2|G|1783

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain BW

Ribosomal protein L24