3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
GGAUAAAUC*GGAAUAC
Length
16 nucleotides
Bulged bases
8P4V|1|1|A|519, 8P4V|1|1|U|520
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P4V_017 not in the Motif Atlas
Homologous match to IL_8P9A_247
Geometric discrepancy: 0.0901
The information below is about IL_8P9A_247
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_58126.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

8P4V|1|1|G|517
8P4V|1|1|G|518
8P4V|1|1|A|519
8P4V|1|1|U|520
8P4V|1|1|A|521
8P4V|1|1|A|522
8P4V|1|1|A|523
8P4V|1|1|U|524
8P4V|1|1|C|525
*
8P4V|1|1|G|567
8P4V|1|1|G|568
8P4V|1|1|A|569
8P4V|1|1|A|570
8P4V|1|1|U|571
8P4V|1|1|A|572
8P4V|1|1|C|573

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 0
60S ribosomal protein L20-A
Chain l
60S ribosomal protein L4-A
Chain o
60S ribosomal protein L7-A
Chain u
60S ribosomal protein L14-A

Coloring options:


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