IL_8P4V_018
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8P4V|1|1|U|534, 8P4V|1|1|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_018 not in the Motif Atlas
- Homologous match to IL_8P9A_248
- Geometric discrepancy: 0.0868
- The information below is about IL_8P9A_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25001.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8P4V|1|1|G|531
8P4V|1|1|A|532
8P4V|1|1|A|533
8P4V|1|1|U|534
8P4V|1|1|G|535
8P4V|1|1|U|536
8P4V|1|1|A|537
8P4V|1|1|G|538
*
8P4V|1|1|U|553
8P4V|1|1|A|554
8P4V|1|1|U|555
8P4V|1|1|U|556
8P4V|1|1|A|557
8P4V|1|1|U|558
8P4V|1|1|A|559
8P4V|1|1|G|560
8P4V|1|1|C|561
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 0
- 60S ribosomal protein L20-A
- Chain u
- 60S ribosomal protein L14-A
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