IL_8P4V_028
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_028 not in the Motif Atlas
- Homologous match to IL_8P9A_258
- Geometric discrepancy: 0.0909
- The information below is about IL_8P9A_258
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.1
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
8P4V|1|1|U|834
8P4V|1|1|G|835
8P4V|1|1|A|836
8P4V|1|1|A|837
8P4V|1|1|G|838
*
8P4V|1|1|U|855
8P4V|1|1|G|856
8P4V|1|1|G|857
8P4V|1|1|A|858
8P4V|1|1|G|859
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-A
- Chain z
- 60S ribosomal protein L19-A
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