IL_8P4V_029

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_029 not in the Motif Atlas

Homologous match to IL_8P9A_259

Geometric discrepancy: 0.0786

The information below is about IL_8P9A_259

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8P4V|1|1|G|869
8P4V|1|1|G|870
8P4V|1|1|U|871
8P4V|1|1|U|872
*
8P4V|1|1|A|888
8P4V|1|1|U|889
8P4V|1|1|C|890

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AK

60S ribosomal protein L37-A

Chain k

60S ribosomal protein L3