3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
UGCCGGAA*UA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P4V_047 not in the Motif Atlas
Homologous match to IL_8P9A_277
Geometric discrepancy: 0.0585
The information below is about IL_8P9A_277
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

8P4V|1|1|U|1173
8P4V|1|1|G|1174
8P4V|1|1|C|1175
8P4V|1|1|C|1176
8P4V|1|1|G|1177
8P4V|1|1|G|1178
8P4V|1|1|A|1179
8P4V|1|1|A|1180
*
8P4V|1|1|U|1325
8P4V|1|1|A|1326

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 0
60S ribosomal protein L20-A
Chain AG
60S ribosomal protein L33-A
Chain o
60S ribosomal protein L7-A
Chain w
60S ribosomal protein L16-A

Coloring options:


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