IL_8P4V_054

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GACGGUGGC*GAAUCCGCUAAGGAGUGUGUAACAACUCAC

Length

39 nucleotides

Bulged bases

8P4V|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P4V|1|1|G|1230
8P4V|1|1|A|1231
8P4V|1|1|C|1232
8P4V|1|1|G|1233
8P4V|1|1|G|1234
8P4V|1|1|U|1235
8P4V|1|1|G|1236
8P4V|1|1|G|1237
8P4V|1|1|C|1238
*
8P4V|1|1|G|1250
8P4V|1|1|A|1251
8P4V|1|1|A|1252
8P4V|1|1|U|1253
8P4V|1|1|C|1254
8P4V|1|1|C|1255
8P4V|1|1|G|1256
8P4V|1|1|C|1257
8P4V|1|1|U|1258
8P4V|1|1|A|1259
8P4V|1|1|A|1260
8P4V|1|1|G|1261
8P4V|1|1|G|1262
8P4V|1|1|A|1263
8P4V|1|1|G|1264
8P4V|1|1|U|1265
8P4V|1|1|G|1266
8P4V|1|1|U|1267
8P4V|1|1|G|1268
8P4V|1|1|U|1269
8P4V|1|1|A|1270
8P4V|1|1|A|1271
8P4V|1|1|C|1272
8P4V|1|1|A|1273
8P4V|1|1|A|1274
8P4V|1|1|C|1275
8P4V|1|1|U|1276
8P4V|1|1|C|1277
8P4V|1|1|A|1278
8P4V|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains