3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
AGAUGG*CGUUUCAAAGGCCUGAUUUUAUGCAGGCCACCAU
Length
40 nucleotides
Bulged bases
8P4V|1|1|C|1556, 8P4V|1|1|A|1558, 8P4V|1|1|G|1573, 8P4V|1|1|C|1574, 8P4V|1|1|C|1581
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8P4V|1|1|A|1537
8P4V|1|1|G|1538
8P4V|1|1|A|1539
8P4V|1|1|U|1540
8P4V|1|1|G|1541
8P4V|1|1|G|1542
*
8P4V|1|1|C|1551
8P4V|1|1|G|1552
8P4V|1|1|U|1553
8P4V|1|1|U|1554
8P4V|1|1|U|1555
8P4V|1|1|C|1556
8P4V|1|1|A|1557
8P4V|1|1|A|1558
8P4V|1|1|A|1559
8P4V|1|1|G|1560
8P4V|1|1|G|1561
8P4V|1|1|C|1562
8P4V|1|1|C|1563
8P4V|1|1|U|1564
8P4V|1|1|G|1565
8P4V|1|1|A|1566
8P4V|1|1|U|1567
8P4V|1|1|U|1568
8P4V|1|1|U|1569
8P4V|1|1|U|1570
8P4V|1|1|A|1571
8P4V|1|1|U|1572
8P4V|1|1|G|1573
8P4V|1|1|C|1574
8P4V|1|1|A|1575
8P4V|1|1|G|1576
8P4V|1|1|G|1577
8P4V|1|1|C|1578
8P4V|1|1|C|1579
8P4V|1|1|A|1580
8P4V|1|1|C|1581
8P4V|1|1|C|1582
8P4V|1|1|A|1583
8P4V|1|1|U|1584

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain 8
60S ribosomal protein L25
Chain AK
60S ribosomal protein L37-A
Chain j
60S ribosomal protein L2-A
Chain p
60S ribosomal protein L8-A
Chain v
60S ribosomal protein L15-A

Coloring options:

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