IL_8P4V_086

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8P4V|1|1|A|2242, 8P4V|1|1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_086 not in the Motif Atlas

Homologous match to IL_8P9A_313

Geometric discrepancy: 0.098

The information below is about IL_8P9A_313

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8P4V|1|1|U|2200
8P4V|1|1|G|2201
*
8P4V|1|1|U|2241
8P4V|1|1|A|2242
8P4V|1|1|A|2243
8P4V|1|1|A|2244

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain j

60S ribosomal protein L2-A