IL_8P4V_098

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8P4V|1|1|A|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_098 not in the Motif Atlas

Homologous match to IL_8P9A_325

Geometric discrepancy: 0.0835

The information below is about IL_8P9A_325

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8P4V|1|1|G|2614
8P4V|1|1|G|2615
*
8P4V|1|1|C|2625
8P4V|1|1|A|2626
8P4V|1|1|C|2627

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain AC

60S ribosomal protein L29

Chain r

60S ribosomal protein L10