3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
CUUAGUAC*GGAACAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P4V_117 not in the Motif Atlas
Homologous match to IL_8P9A_344
Geometric discrepancy: 0.0877
The information below is about IL_8P9A_344
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8P4V|1|1|C|3018
8P4V|1|1|U|3019
8P4V|1|1|U|3020
8P4V|1|1|A|3021
8P4V|1|1|G|3022
8P4V|1|1|U|3023
8P4V|1|1|A|3024
8P4V|1|1|C|3025
*
8P4V|1|1|G|3030
8P4V|1|1|G|3031
8P4V|1|1|A|3032
8P4V|1|1|A|3033
8P4V|1|1|C|3034
8P4V|1|1|A|3035
8P4V|1|1|G|3036

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 6
60S ribosomal protein L23-A
Chain AN
Ubiquitin-60S ribosomal protein L40
Chain k
60S ribosomal protein L3
Chain q
60S ribosomal protein L9-A

Coloring options:


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