IL_8P4V_133
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_133 not in the Motif Atlas
- Homologous match to IL_8P9A_360
- Geometric discrepancy: 0.0899
- The information below is about IL_8P9A_360
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70411.2
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8P4V|1|1|U|3332
8P4V|1|1|G|3333
8P4V|1|1|U|3334
8P4V|1|1|A|3335
8P4V|1|1|A|3336
8P4V|1|1|G|3337
*
8P4V|1|1|C|3367
8P4V|1|1|U|3368
8P4V|1|1|G|3369
8P4V|1|1|A|3370
8P4V|1|1|G|3371
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 60S ribosomal protein L24-A
- Chain AE
- 60S ribosomal protein L31-A
- Chain k
- 60S ribosomal protein L3
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