IL_8P4V_138
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_138 not in the Motif Atlas
- Homologous match to IL_8P9A_365
- Geometric discrepancy: 0.1009
- The information below is about IL_8P9A_365
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.1
- Basepair signature
- cWW-tSH-L-R-L-tHH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8P4V|1|3|G|21
8P4V|1|3|A|22
8P4V|1|3|A|23
8P4V|1|3|A|24
8P4V|1|3|G|25
8P4V|1|3|C|26
8P4V|1|3|A|27
*
8P4V|1|3|U|53
8P4V|1|3|U|54
8P4V|1|3|A|55
8P4V|1|3|A|56
8P4V|1|3|G|57
8P4V|1|3|C|58
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain m
- 60S ribosomal protein L5
- Chain s
- Large ribosomal subunit protein uL5B
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