IL_8P4V_158

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UCGAC*GAAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_158 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3637

The information below is about IL_7A0S_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8P4V|1|A|U|185
8P4V|1|A|C|186
8P4V|1|A|G|187
8P4V|1|A|A|188
8P4V|1|A|C|189
*
8P4V|1|A|G|196
8P4V|1|A|A|197
8P4V|1|A|A|198
8P4V|1|A|G|199
8P4V|1|A|A|200

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8-A