IL_8P4V_218
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_218 not in the Motif Atlas
- Homologous match to IL_8C3A_466
- Geometric discrepancy: 0.2076
- The information below is about IL_8C3A_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48143.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8P4V|1|A|G|1480
8P4V|1|A|C|1481
8P4V|1|A|C|1482
8P4V|1|A|A|1483
8P4V|1|A|G|1484
8P4V|1|A|C|1485
8P4V|1|A|G|1486
8P4V|1|A|A|1487
*
8P4V|1|A|U|1519
8P4V|1|A|U|1520
8P4V|1|A|G|1521
8P4V|1|A|U|1522
8P4V|1|A|G|1523
8P4V|1|A|A|1524
8P4V|1|A|A|1525
8P4V|1|A|A|1526
8P4V|1|A|C|1527
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS3
- Chain G
- 40S ribosomal protein S5
- Chain R
- 40S ribosomal protein S16-A
- Chain U
- 40S ribosomal protein S19-A
- Chain V
- Small ribosomal subunit protein uS10
- Chain e
- Small ribosomal subunit protein uS14A
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