IL_8P4V_228

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

8P4V|1|A|U|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_228 not in the Motif Atlas

Homologous match to IL_8P9A_458

Geometric discrepancy: 0.4792

The information below is about IL_8P9A_458

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8P4V|1|A|U|1656
8P4V|1|A|U|1657
8P4V|1|A|G|1658
*
8P4V|1|A|U|1743
8P4V|1|A|A|1744

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 6

60S ribosomal protein L23-A

Chain AO

60S ribosomal protein L41-A

Chain Y

40S ribosomal protein S23-A