IL_8P4V_234

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8P4V|1|AR|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_234 not in the Motif Atlas

Homologous match to IL_8P9A_232

Geometric discrepancy: 0.0827

The information below is about IL_8P9A_232

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8P4V|1|AR|A|13
8P4V|1|AR|U|14
8P4V|1|AR|C|15
*
8P4V|1|AT|G|144
8P4V|1|AT|U|145

Current chains

Chain AR

25S ribosomal RNA

Chain AT

5.8S ribosomal RNA

Nearby chains

Chain CJ

60S ribosomal protein L8-A

Chain CP

60S ribosomal protein L15-A

Chain CZ

60S ribosomal protein L25