IL_8P4V_256

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_256 not in the Motif Atlas

Homologous match to IL_8P9A_254

Geometric discrepancy: 0.0643

The information below is about IL_8P9A_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8P4V|1|AR|C|758
8P4V|1|AR|U|759
8P4V|1|AR|G|760
8P4V|1|AR|A|761
8P4V|1|AR|U|762
8P4V|1|AR|G|763
*
8P4V|1|AR|C|768
8P4V|1|AR|G|769
8P4V|1|AR|G|770
8P4V|1|AR|A|771
8P4V|1|AR|U|772
8P4V|1|AR|G|773

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CN

60S ribosomal protein L13-A

Chain DC

60S ribosomal protein L28

Chain DQ

60S ribosomal protein L42-A