IL_8P4V_266

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

8P4V|1|AR|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_266 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.0967

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8P4V|1|AR|C|977
8P4V|1|AR|G|978
8P4V|1|AR|U|979
8P4V|1|AR|A|980
8P4V|1|AR|U|981
*
8P4V|1|AR|A|1102
8P4V|1|AR|A|1103
8P4V|1|AR|G|1104

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CI

60S ribosomal protein L7-A

Chain CS

60S ribosomal protein L18-A

Chain DD

60S ribosomal protein L29