IL_8P4V_267

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

8P4V|1|AR|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_267 not in the Motif Atlas

Homologous match to IL_8P9A_265

Geometric discrepancy: 0.0772

The information below is about IL_8P9A_265

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8P4V|1|AR|A|983
8P4V|1|AR|G|984
8P4V|1|AR|U|985
*
8P4V|1|AR|A|1099
8P4V|1|AR|U|1100

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CI

60S ribosomal protein L7-A

Chain CS

60S ribosomal protein L18-A

Chain CV

60S ribosomal protein L21-A

Chain DD

60S ribosomal protein L29