IL_8P4V_285

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8P4V|1|AR|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_285 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.0825

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8P4V|1|AR|G|1262
8P4V|1|AR|A|1263
8P4V|1|AR|G|1264
8P4V|1|AR|U|1265
8P4V|1|AR|G|1266
*
8P4V|1|AR|C|1275
8P4V|1|AR|U|1276
8P4V|1|AR|C|1277

Current chains

Chain AR

25S ribosomal RNA

Nearby chains