IL_8P4V_297

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_297 not in the Motif Atlas

Homologous match to IL_8P9A_295

Geometric discrepancy: 0.0771

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8P4V|1|AR|U|1645
8P4V|1|AR|G|1646
8P4V|1|AR|A|1647
8P4V|1|AR|A|1648
8P4V|1|AR|U|1649
*
8P4V|1|AR|A|1806
8P4V|1|AR|G|1807
8P4V|1|AR|G|1808
8P4V|1|AR|A|1809
8P4V|1|AR|A|1810

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain DB

60S ribosomal protein L27-A

Chain DI

60S ribosomal protein L34-A