IL_8P4V_307

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_307 not in the Motif Atlas

Geometric match to IL_5TBW_474

Geometric discrepancy: 0.0621

The information below is about IL_5TBW_474

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.2

Basepair signature

cWW-tHW-L-cWW-cWW-tSH-cWW-R-L-L

Number of instances in this motif group

6

Unit IDs

8P4V|1|AR|G|1898
8P4V|1|AR|G|1899
8P4V|1|AR|A|1900
8P4V|1|AR|A|1901
8P4V|1|AR|G|1902
8P4V|1|AR|U|1903
8P4V|1|AR|C|1904
8P4V|1|AR|G|1905
8P4V|1|AR|G|1906
*
8P4V|1|AR|C|2333
8P4V|1|AR|U|2334
8P4V|1|AR|G|2335
8P4V|1|AR|U|2336
8P4V|1|AR|C|2337

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CX

60S ribosomal protein L23-A