IL_8P4V_309

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8P4V|1|AR|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_309 not in the Motif Atlas

Homologous match to IL_8P9A_307

Geometric discrepancy: 0.0574

The information below is about IL_8P9A_307

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8P4V|1|AR|C|1918
8P4V|1|AR|G|1919
8P4V|1|AR|U|1920
8P4V|1|AR|A|1921
8P4V|1|AR|A|1922
8P4V|1|AR|C|1923
*
8P4V|1|AR|G|1928
8P4V|1|AR|G|1929
8P4V|1|AR|A|1930
8P4V|1|AR|U|1931
8P4V|1|AR|A|1932
8P4V|1|AR|A|1933
8P4V|1|AR|G|1934

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DP

60S ribosomal protein L41-A

Chain DR

60S ribosomal protein L43-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA