IL_8P4V_314

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8P4V|1|AR|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_314 not in the Motif Atlas

Homologous match to IL_8P9A_312

Geometric discrepancy: 0.1084

The information below is about IL_8P9A_312

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8P4V|1|AR|C|2196
8P4V|1|AR|C|2197
8P4V|1|AR|A|2198
8P4V|1|AR|G|2199
*
8P4V|1|AR|C|2245
8P4V|1|AR|G|2246

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA