IL_8P4V_315
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UG*UAAA
- Length
- 6 nucleotides
- Bulged bases
- 8P4V|1|AR|A|2242, 8P4V|1|AR|A|2243
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_315 not in the Motif Atlas
- Homologous match to IL_8P9A_313
- Geometric discrepancy: 0.0618
- The information below is about IL_8P9A_313
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_82107.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
8P4V|1|AR|U|2200
8P4V|1|AR|G|2201
*
8P4V|1|AR|U|2241
8P4V|1|AR|A|2242
8P4V|1|AR|A|2243
8P4V|1|AR|A|2244
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L2-A
- Chain sR
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: