IL_8P4V_319

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_319 not in the Motif Atlas

Geometric match to IL_8C3A_094

Geometric discrepancy: 0.0906

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8P4V|1|AR|G|2276
8P4V|1|AR|C|2277
*
8P4V|1|AR|G|2307
8P4V|1|AR|C|2308
8P4V|1|AR|A|2309
8P4V|1|AR|U|2310

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DP

60S ribosomal protein L41-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA