IL_8P4V_323

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8P4V|1|AR|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_323 not in the Motif Atlas

Homologous match to IL_8P9A_321

Geometric discrepancy: 0.0874

The information below is about IL_8P9A_321

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8P4V|1|AR|G|2409
8P4V|1|AR|U|2410
8P4V|1|AR|U|2411
*
8P4V|1|AR|A|2811
8P4V|1|AR|C|2812

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L4-A

Chain DC

60S ribosomal protein L28