IL_8P4V_330
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- GUCC*GC
- Length
- 6 nucleotides
- Bulged bases
- 8P4V|1|AR|C|2772
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_330 not in the Motif Atlas
- Homologous match to IL_8P9A_328
- Geometric discrepancy: 0.1526
- The information below is about IL_8P9A_328
- Detailed Annotation
- Single stack bend with bulge
- Broad Annotation
- Single stack bend with bulge
- Motif group
- IL_90729.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 30
Unit IDs
8P4V|1|AR|G|2770
8P4V|1|AR|U|2771
8P4V|1|AR|C|2772
8P4V|1|AR|C|2773
*
8P4V|1|AR|G|2787
8P4V|1|AR|C|2788
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CN
- 60S ribosomal protein L13-A
- Chain CS
- 60S ribosomal protein L18-A
- Chain DC
- 60S ribosomal protein L28
- Chain DQ
- 60S ribosomal protein L42-A
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