IL_8P4V_334

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_334 not in the Motif Atlas

Homologous match to IL_8P9A_333

Geometric discrepancy: 0.0734

The information below is about IL_8P9A_333

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8P4V|1|AR|U|2835
8P4V|1|AR|C|2836
8P4V|1|AR|A|2837
8P4V|1|AR|A|2838
8P4V|1|AR|G|2839
*
8P4V|1|AR|C|2849
8P4V|1|AR|G|2850
8P4V|1|AR|A|2851
8P4V|1|AR|C|2852
8P4V|1|AR|A|2853

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L10

Chain DO

Ubiquitin-60S ribosomal protein L40