IL_8P4V_336

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8P4V|1|AR|G|2945, 8P4V|1|AR|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_336 not in the Motif Atlas

Homologous match to IL_8P9A_335

Geometric discrepancy: 0.0588

The information below is about IL_8P9A_335

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8P4V|1|AR|C|2879
8P4V|1|AR|U|2880
8P4V|1|AR|C|2881
*
8P4V|1|AR|G|2943
8P4V|1|AR|U|2944
8P4V|1|AR|G|2945
8P4V|1|AR|A|2946
8P4V|1|AR|G|2947

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CX

60S ribosomal protein L23-A