IL_8P4V_369
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 8P4V|1|AS|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_369 not in the Motif Atlas
- Homologous match to IL_8P9A_369
- Geometric discrepancy: 0.0517
- The information below is about IL_8P9A_369
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
8P4V|1|AS|A|72
8P4V|1|AS|C|73
8P4V|1|AS|C|74
8P4V|1|AS|G|75
8P4V|1|AS|A|76
8P4V|1|AS|G|77
8P4V|1|AS|U|78
8P4V|1|AS|A|79
8P4V|1|AS|G|80
*
8P4V|1|AS|C|100
8P4V|1|AS|G|101
8P4V|1|AS|A|102
8P4V|1|AS|A|103
8P4V|1|AS|A|104
8P4V|1|AS|C|105
8P4V|1|AS|U|106
Current chains
- Chain AS
- 5S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CI
- 60S ribosomal protein L7-A
- Chain CL
- 60S ribosomal protein L10
- Chain CU
- 60S ribosomal protein L20-A
- Chain CV
- 60S ribosomal protein L21-A
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