IL_8P4V_379
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 8P4V|1|sR|U|66, 8P4V|1|sR|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_379 not in the Motif Atlas
- Homologous match to IL_8P9A_379
- Geometric discrepancy: 0.0765
- The information below is about IL_8P9A_379
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21667.1
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8P4V|1|sR|U|64
8P4V|1|sR|A|65
8P4V|1|sR|U|66
8P4V|1|sR|A|67
8P4V|1|sR|A|68
8P4V|1|sR|G|69
*
8P4V|1|sR|U|82
8P4V|1|sR|G|83
8P4V|1|sR|A|84
8P4V|1|sR|A|85
8P4V|1|sR|A|86
Current chains
- Chain sR
- 18S ribosomal RNA
Nearby chains
- Chain CY
- 60S ribosomal protein L24-A
- Chain d4
- 40S ribosomal protein S24-A
- Chain s6
- 40S ribosomal protein S6-A
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