IL_8P4V_381

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

8P4V|1|sR|C|114, 8P4V|1|sR|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_381 not in the Motif Atlas

Homologous match to IL_8P9A_381

Geometric discrepancy: 0.0711

The information below is about IL_8P9A_381

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

8P4V|1|sR|U|113
8P4V|1|sR|C|114
8P4V|1|sR|G|115
8P4V|1|sR|U|116
*
8P4V|1|sR|A|300
8P4V|1|sR|A|301

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain s4

40S ribosomal protein S4-A

Chain s8

40S ribosomal protein S8-A