IL_8P4V_385

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UCGAC*GAAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_385 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2955

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8P4V|1|sR|U|185
8P4V|1|sR|C|186
8P4V|1|sR|G|187
8P4V|1|sR|A|188
8P4V|1|sR|C|189
*
8P4V|1|sR|G|196
8P4V|1|sR|A|197
8P4V|1|sR|A|198
8P4V|1|sR|G|199
8P4V|1|sR|A|200

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain s8

40S ribosomal protein S8-A