IL_8P4V_388

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AGAUAAAAAAUCAAUGUCUUCGGACUCUUUG*CAU

Length

34 nucleotides

Bulged bases

8P4V|1|sR|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P4V|1|sR|A|213
8P4V|1|sR|G|214
8P4V|1|sR|A|215
8P4V|1|sR|U|216
8P4V|1|sR|A|217
8P4V|1|sR|A|218
8P4V|1|sR|A|219
8P4V|1|sR|A|220
8P4V|1|sR|A|221
8P4V|1|sR|A|222
8P4V|1|sR|U|223
8P4V|1|sR|C|224
8P4V|1|sR|A|225
8P4V|1|sR|A|226
8P4V|1|sR|U|227
8P4V|1|sR|G|228
8P4V|1|sR|U|229
8P4V|1|sR|C|230
8P4V|1|sR|U|231
8P4V|1|sR|U|232
8P4V|1|sR|C|233
8P4V|1|sR|G|234
8P4V|1|sR|G|235
8P4V|1|sR|A|236
8P4V|1|sR|C|237
8P4V|1|sR|U|238
8P4V|1|sR|C|239
8P4V|1|sR|U|240
8P4V|1|sR|U|241
8P4V|1|sR|U|242
8P4V|1|sR|G|243
*
8P4V|1|sR|C|250
8P4V|1|sR|A|251
8P4V|1|sR|U|252

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain s4

40S ribosomal protein S4-A

Chain s6

40S ribosomal protein S6-A

Chain s8

40S ribosomal protein S8-A