IL_8P4V_411

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_411 not in the Motif Atlas

Homologous match to IL_8P9A_410

Geometric discrepancy: 0.0683

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8P4V|1|sR|G|703
8P4V|1|sR|C|704
8P4V|1|sR|U|705
8P4V|1|sR|A|706
8P4V|1|sR|A|707
8P4V|1|sR|C|708
*
8P4V|1|sR|G|730
8P4V|1|sR|C|731
8P4V|1|sR|G|732
8P4V|1|sR|A|733
8P4V|1|sR|A|734
8P4V|1|sR|C|735

Current chains

Chain sR

18S ribosomal RNA

Nearby chains