IL_8P4V_434

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGG*CACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_434 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.3748

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8P4V|1|sR|C|1177
8P4V|1|sR|G|1178
8P4V|1|sR|G|1179
*
8P4V|1|sR|C|1459
8P4V|1|sR|A|1460
8P4V|1|sR|C|1461
8P4V|1|sR|G|1462

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c5

40S ribosomal protein S15

Chain c8

40S ribosomal protein S18-A

Chain sM

Suppressor protein STM1