IL_8P4V_436

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CACAAUAAGGAUUG*CUUGAUUUUGUG

Length

26 nucleotides

Bulged bases

8P4V|1|sR|G|1228, 8P4V|1|sR|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P4V|1|sR|C|1220
8P4V|1|sR|A|1221
8P4V|1|sR|C|1222
8P4V|1|sR|A|1223
8P4V|1|sR|A|1224
8P4V|1|sR|U|1225
8P4V|1|sR|A|1226
8P4V|1|sR|A|1227
8P4V|1|sR|G|1228
8P4V|1|sR|G|1229
8P4V|1|sR|A|1230
8P4V|1|sR|U|1231
8P4V|1|sR|U|1232
8P4V|1|sR|G|1233
*
8P4V|1|sR|C|1252
8P4V|1|sR|U|1253
8P4V|1|sR|U|1254
8P4V|1|sR|G|1255
8P4V|1|sR|A|1256
8P4V|1|sR|U|1257
8P4V|1|sR|U|1258
8P4V|1|sR|U|1259
8P4V|1|sR|U|1260
8P4V|1|sR|G|1261
8P4V|1|sR|U|1262
8P4V|1|sR|G|1263

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain c2

40S ribosomal protein S12

Chain d9

Small ribosomal subunit protein uS14A

Chain e1

Ubiquitin