IL_8P4V_437

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_437 not in the Motif Atlas

Homologous match to IL_8P9A_436

Geometric discrepancy: 0.095

The information below is about IL_8P9A_436

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14688.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8P4V|1|sR|A|1234
8P4V|1|sR|C|1235
8P4V|1|sR|A|1236
*
8P4V|1|sR|U|1249
8P4V|1|sR|U|1250
8P4V|1|sR|U|1251

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d9

Small ribosomal subunit protein uS14A

Chain e1

Ubiquitin