IL_8P4V_438

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGUG*CCU

Length

7 nucleotides

Bulged bases

8P4V|1|sR|U|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_438 not in the Motif Atlas

Geometric match to IL_4AOB_005

Geometric discrepancy: 0.2284

The information below is about IL_4AOB_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8P4V|1|sR|G|1267
8P4V|1|sR|G|1268
8P4V|1|sR|U|1269
8P4V|1|sR|G|1270
*
8P4V|1|sR|C|1440
8P4V|1|sR|C|1441
8P4V|1|sR|U|1442

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain d9

Small ribosomal subunit protein uS14A