3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
GGGAUA*UUCAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P4V_450 not in the Motif Atlas
Homologous match to IL_8P9A_451
Geometric discrepancy: 0.0738
The information below is about IL_8P9A_451
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85536.2
Basepair signature
cWW-tSH-L-R-tHS-cWW-cWW
Number of instances in this motif group
8

Unit IDs

8P4V|1|sR|G|1540
8P4V|1|sR|G|1541
8P4V|1|sR|G|1542
8P4V|1|sR|A|1543
8P4V|1|sR|U|1544
8P4V|1|sR|A|1545
*
8P4V|1|sR|U|1566
8P4V|1|sR|U|1567
8P4V|1|sR|C|1568
8P4V|1|sR|A|1569
8P4V|1|sR|A|1570
8P4V|1|sR|C|1571

Current chains

Chain sR
18S ribosomal RNA

Nearby chains

Chain c8
40S ribosomal protein S18-A
Chain c9
40S ribosomal protein S19-A

Coloring options:


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